Enzymind Labs

Mark Dow

Space Software animations

Euglena Academy's fall program is out, see below. I'm going to try to get to a couple of the Cozmic Pizza presentations.

Euglena Academy is an independent, college-level school for adults (18+) in Eugene, Oregon offers scientifically rigorous classes (beginning & advanced) and workshops about systems sciences (also known as complexity). 

Human brain animations

Resources for, and animations of, a human brain. These are primarily surface renderings from MRI volume data. Space Software was used for most manipulation and rendering.

Example animations

Human brain serial slices of MRI animations

Description of remove_background_peak_image.m (MATLAB)

See attached code file, remove_background_peak_image.m.

[ vPeak fFWHM_range imZeroBackground ] = remove_background_peak_image( strInputFilename, fFWHM, bShow )

USAGE:  [ vPeak fFWHM_range imZeroBackground ] = remove_background_peak_image( 'test_remove_background.png', 1.5, true );

Virus structure and mechanics information and references

General information about viruses

Virus and virion data sources

P22 virion

P22 overviews

P22 tail machine

P22 capsid

Other virions

Test renderings of the P22 virion EMD-1220 data set

Central slice. Note the needle and lead dsDNA detail (near center), and more than four concentric shells through the horizontal plane at center of capsid.

Stereo pairs (cross-view):

P22 virion structure, EMD_1220 rendering notes

"For a physicist, it is indeed a great joy to learn how we can use beautiful mathematics to understand the real world."  In Stephen Weinberg's "Without God" (9/25/08, The New York Review of Books)

Data source

Processing notes