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"Changing Brains" example animations

 

"Changing Brains" example animations

    These images, animations and references are for a Brain Development Lab video project called "Changing Brains" about the interactions between experience and brain development in children. They  illustrate the modularity of various brain functions.

Euglena Academy's fall program

 

Euglena Academy's fall program is out, see below. I'm going to try to get to a couple of the Cozmic Pizza presentations.

Euglena Academy is an independent, college-level school for adults (18+) in Eugene, Oregon offers scientifically rigorous classes (beginning & advanced) and workshops about systems sciences (also known as complexity). 

Human brain animations

 

Human brain animations

 

Resources for, and animations of, a human brain. These are primarily surface renderings from MRI volume data. Space Software was used for most manipulation and rendering.

Example animations

Human brain serial slices of MRI animations

remove_background_peak_image.m, program description

 

Description of remove_background_peak_image.m (MATLAB)

See attached code file, remove_background_peak_image.m.

[ vPeak fFWHM_range imZeroBackground ] = remove_background_peak_image( strInputFilename, fFWHM, bShow )

USAGE:  [ vPeak fFWHM_range imZeroBackground ] = remove_background_peak_image( 'test_remove_background.png', 1.5, true );

Test renderings of the P22 virion EMD-1220 data set

Test renderings of the P22 virion EMD-1220 data set

 

Also see larger version of many of these images in the Volume Renderings gallery.

 

Central slice. Note the needle and lead dsDNA detail (near center), and more than four concentric shells through the horizontal plane at center of capsid.

Stereo pairs (cross-view):

P22 virion structure, EMD-1220 rendering notes

P22 virion structure, EMD_1220 rendering notes

"For a physicist, it is indeed a great joy to learn how we can use beautiful mathematics to understand the real world."  In Stephen Weinberg's "Without God" (9/25/08, The New York Review of Books)

Data source

Processing notes

2x2 symmetric L-systems

2x2 symmetric L-systems

"Symmetry is a complexity-reducing concept; seek it everywhere." Alan Perlis

   The simplest 2x2 replacement systems with rules that are globally and locally symmetric.
   
    Many other types of systems also have a large number of symmetries, for example:

Bridge Thin photography

Doug Heiken and I took some video and still photos of forest land near the Blue River Resevoir, OR, that will be thinned, with the intention of re-photography after the thin. These are related notes and materials.

A 90 year old forest of mostly Douglas fir that was naturally established after fire about 90 years ago. This area will be thinned as part of the Bridge Thin timber sale, probably in late 2008 or 2009. The prescription is 17 foot "designation by description." Unit 82 and part of unit 80 are included in the polygon (see below).

2x2 4 rotation cyclic

2x2 4-rotation cyclic L-systems

 

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